PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0025500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 259aa    MW: 27193.9 Da    PI: 9.0308
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0025500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-1996150256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ +++k+q  +Lee+F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  ORGLA06G0025500.1  96 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTK 150
                        788899***********************************************98 PP
2HD-ZIP_I/II125.23e-4096186192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk
  ORGLA06G0025500.1  96 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 186
                        69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1871153IPR009057Homeodomain-like
SuperFamilySSF466895.99E-1984153IPR009057Homeodomain-like
PROSITE profilePS5007116.66592152IPR001356Homeobox domain
SMARTSM003892.8E-1794156IPR001356Homeobox domain
CDDcd000861.24E-1596153No hitNo description
PfamPF000466.9E-1796150IPR001356Homeobox domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PfamPF021835.1E-11152186IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-19152195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEMIR RDDVVAAAAA EDERFACSPG  60
SPVSSGSGKR GSGSGSGDEV DDAGCDVGGG GGGGARKKLR LSKDQAAVLE ECFKTHHTLT  120
PKQKVALAKS LNLRPRQVEV WFQNRRARTK LKQTEVDCEH LKRWCDQLAD DNRRLHKELA  180
ELRALKATPT PPAAAPPLTT LTMCLSCKRV ANAGVPSPAA AMFPGHPQFL CGFRDHAGAA  240
SSSYGGASSG LAKGVRAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0025500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0591160.0AK059116.1 Oryza sativa Japonica Group cDNA clone:001-022-E09, full insert sequence.
GenBankEU8475160.0EU847516.1 Oryza sativa Japonica Group clone OsHD2B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642539.11e-130homeobox-leucine zipper protein HOX28
SwissprotA2Y9311e-131HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-131HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLI1PZE20.0I1PZE2_ORYGL; Uncharacterized protein
STRINGORGLA06G0025500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-45homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]