PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0066200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 232aa    MW: 25776.4 Da    PI: 7.8654
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0066200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS156.91.8e-4829167229374
               GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                        + +++lsPkv+vv+eqe++hn++ + erf+eal+yy+alfd+le++ ++ s er+ vEr llg+ei+n+vac g errerhe       rle
  ORGLA06G0066200.1  29 ESLRGLSPKVMVVTEQEVSHNAAGLTERFVEALNYYAALFDCLEVGGASGSVERTRVERWLLGEEIKNIVACDGGERRERHE-------RLE 113
                        5789*****************************************************************************9.......999 PP

               GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         aGF+ vpls++a  qa+++ +  + dg++v+ee+g ++l+W+dr+L+svSaWr
  ORGLA06G0066200.1 114 GAGFGRVPLSYYALLQARRVAQGLGCDGFKVQEEKGNFFLCWQDRALFSVSAWR 167
                        *****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.3761147IPR005202Transcription factor GRAS
PfamPF035146.1E-4629167IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MALTKKAERL DVQFQFNPVV SRLDALDVES LRGLSPKVMV VTEQEVSHNA AGLTERFVEA  60
LNYYAALFDC LEVGGASGSV ERTRVERWLL GEEIKNIVAC DGGERRERHE RLEGAGFGRV  120
PLSYYALLQA RRVAQGLGCD GFKVQEEKGN FFLCWQDRAL FSVSAWRGRR FAALLPLPPS  180
TPLPCSRVIA TLLSSPPRHR LTPPAAALLS SPSVLPRAER EDEGREEGKE RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-213169179381Protein SCARECROW
5b3h_A8e-213169178380Protein SCARECROW
5b3h_D8e-213169178380Protein SCARECROW
5hyz_A7e-2132167230375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0066200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034580.0AP003458.4 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0701E03.
GenBankAP0046870.0AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165765.17e-86scarecrow-like protein 3
SwissprotQ9LPR81e-54SCL3_ARATH; Scarecrow-like protein 3
TrEMBLI1Q0J91e-166I1Q0J9_ORYGL; Uncharacterized protein
STRINGORGLA06G0066200.11e-167(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.19e-46scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]