PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0074000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 206aa    MW: 22224.6 Da    PI: 4.5744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0074000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.7e-141363155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ykGVr +  +g+ vAeIr ps+   r r++lg+++t+e+Aa+a +aa   l+g
  ORGLA06G0074000.1 13 KKYKGVRLRQ-WGKXVAEIRLPSS---RERVWLGSYDTPEKAARAFDAAFVFLRG 63
                       59*****998.**********965...4********************9887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-201377No hitNo description
PROSITE profilePS5103219.4671475IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-161475IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-231477IPR001471AP2/ERF domain
SMARTSM003802.1E-231481IPR001471AP2/ERF domain
PfamPF008476.4E-71458IPR001471AP2/ERF domain
PRINTSPR003677.2E-81526IPR001471AP2/ERF domain
PRINTSPR003677.2E-83753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MQTKNTAAPA PEKKYKGVRL RQWGKXVAEI RLPSSRERVW LGSYDTPEKA ARAFDAAFVF  60
LRGAGAADAA GLNFADSPLP VVARTRDLRE VYAFAVSHAN RPPPVAGETA ATALAAMAAL  120
EHNEVRENIA PSSPLSAVQV AAPPAGSFDW SQLMANSPPL YSPIVIGIHA YDDLAVWPTT  180
QPVEEFSEED NENEGATSDE LWSFDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0074000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055450.0AP005545.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0638H11.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.11e-144ethylene-responsive transcription factor ERF018-like
TrEMBLI1Q0S71e-146I1Q0S7_ORYGL; Uncharacterized protein
STRINGORGLA06G0074000.11e-146(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-25ERF family protein