PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA06G0093700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 142aa MW: 16464.8 Da PI: 11.9002

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA06G0093700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.6e-15	37	85	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+e+d l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l ORGLA06G0093700.1 37 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhrSRRSPAQCRDRWRDHL 85 7******************************9**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.575	30	89	IPR017930	Myb domain
SMART	SM00717	2.3E-8	34	87	IPR001005	SANT/Myb domain
CDD	cd00167	1.44E-8	37	85	No hit	No description
Pfam	PF00249	6.1E-14	37	85	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.2E-17	37	110	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-16	37	102	IPR009057	Homeodomain-like
SMART	SM00717	50	90	128	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MDMELSSSSS AASVFASSSA TSPPLGRCVV RIRLPPAWTP ELDAVLERLA MEHGSRHWRR 60 VAAQMPRHRS RRSPAQCRDR WRDHLARDVF HRPFTADDDA ELARLCLRLD DGRSSRAVKR 120 RWRELRKSDA FLGKLWRRPL SH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3osf_A	1e-12	29	122	1	103	MYB21
3osf_D	1e-12	29	122	1	103	MYB21
3osg_A	1e-12	29	122	1	103	MYB21
3osg_D	1e-12	29	122	1	103	MYB21
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	120	RAVKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA06G0093700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642267.1	9e-94	transcription factor MYB44
TrEMBL	I1Q1C4	4e-94	I1Q1C4_ORYGL; Uncharacterized protein
STRING	ORGLA06G0093700.1	7e-95	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	1e-14	myb domain protein r1