PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA06G0121500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 223aa MW: 23681.1 Da PI: 7.5633

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA06G0121500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	33.5	1e-10	101	120	34	53
ZF-HD_dimer 34 eegtaaalkCaACgCHRnFH 53 e +++++lkCaACgCHRnFH ORGLA06G0121500.1 101 EPADPTSLKCAACGCHRNFH 120 44789*************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-4	99	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.1E-8	99	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
XSXACLRQRQ QQQPTAAVAA AASMASARLH ASAQPAASSL ETWLRWSLCR LYPSVATAAT 60 STAGGGRRRD GVPGVPQEPR SEPGRTRAGR LRGVHAVVAG EPADPTSLKC AACGCHRNFH 120 CWLLEGSPPP PPPLALPAPP MPANVLHGQL HREEETPEVR LPGVDGDEFD NNSDGSEYYD 180 ERSVSPPSPP HLPAAVVHQP YYPSAQHMLL SLGSSGQAQR LPL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA06G0121500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005449	0.0	AP005449.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427E01.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610599.1	1e-22	zinc-finger homeodomain protein 9
Swissprot	Q6ER21	1e-23	ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBL	I1Q252	1e-156	I1Q252_ORYGL; Uncharacterized protein
STRING	ORGLA06G0121500.1	1e-157	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP21657	5	5