PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0135300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21257.2 Da    PI: 11.0583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0135300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF627e-202066349
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       i+ k +rqvtfskRr g++KKA+E+S+L +a va++ fs+ g+++ +
  ORGLA06G0135300.1 20 IDGKEKRQVTFSKRRRGLFKKASEISTLSGASVAIVSFSKAGNVFAF 66
                       78899**************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-221069IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-221080IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.9091070IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-151232IPR002100Transcription factor, MADS-box
PfamPF003199.8E-202066IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGRPRGGTSK GKQKIEMCCI DGKEKRQVTF SKRRRGLFKK ASEISTLSGA SVAIVSFSKA  60
GNVFAFGSPS VDAVLRRHVV AGPSTSTSHA HAGGDVFADD GGDNPEVLNA LKRATDEAAA  120
EVAAEDARQS GVEGKITEAM AAGRRRFWWD AANVEALGEA ELPVFERALH KLRGAVVRRR  180
SGAKPPPPPP RRSKKKLLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0135300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642715.11e-127agamous-like MADS-box protein AGL61
TrEMBLI1Q2J01e-140I1Q2J0_ORYGL; Uncharacterized protein
STRINGORGLA06G0135300.11e-141(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2047878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-23AGAMOUS-like 62