PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0135400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 346aa    MW: 36496.1 Da    PI: 4.2614
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0135400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72e-27176232257
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                         D ++WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver++ dp+++  tY+g H 
  ORGLA06G0135400.1 176 PDSWAWRKYGQKPIKGSPYPRGYYRCSSNkNCAARKQVERCRLDPSFLLLTYTGAHS 232
                        599*************************99**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-28161232IPR003657WRKY domain
PROSITE profilePS5081127.623170237IPR003657WRKY domain
SuperFamilySSF1182901.2E-23170233IPR003657WRKY domain
SMARTSM007741.7E-31175236IPR003657WRKY domain
PfamPF031062.9E-22177232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDGDAWWYAG GGGGGGSNNW DLGAVVRFGC GGGRVSPAAA LLGEAWEYDD DPFSSFLAPP  60
MTAQQAALPA VWEEGDDGDA AWMPPLPGLQ TGGGWGDQAP MVVDELCGAL VVAPPPPPKQ  120
QEVLQVQQQP PSADNTQPTT DQQGSGGDGE STRAGGSRKK QTRKEVVRVA ASGPAPDSWA  180
WRKYGQKPIK GSPYPRGYYR CSSNKNCAAR KQVERCRLDP SFLLLTYTGA HSGHDVPLHR  240
NSLAGTTRHK PPPPPPLPSA ADKSPATAAE AATASQSPGL SPTTPLRASS MELHGEDDAE  300
AELQVEEDDM AIDDEDDDDV ADETISTVPW GTPISDAIIA ASYEWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-151772371674WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0135400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881961.10.0WRKY transcription factor 22-like
TrEMBLI1Q2J10.0I1Q2J1_ORYGL; Uncharacterized protein
STRINGORGLA06G0135400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-36WRKY family protein