PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0179000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 71aa    MW: 7594.61 Da    PI: 10.4657
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0179000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.45.6e-072562544
                       CHHHCHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkq.kNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                       kr+ +++ +NRe+A   R RK+  ++ L+  v+ L  eN  
  ORGLA06G0179000.1 25 KRQVKMMlSNRESA---RMRKQRHLDDLTAQVAHLHRENVH 62
                       77877655******...79********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-52662No hitNo description
SuperFamilySSF579591.22E-62666No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
GAAGGGGGGA SSSAVEEELR ALMEKRQVKM MLSNRESARM RKQRHLDDLT AQVAHLHREN  60
VHVATALGLT T
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0179000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035413e-95AP003541.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0530H05.
GenBankAP0047373e-95AP004737.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21.
GenBankAP0149623e-95AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689573.14e-28PREDICTED: ocs element-binding factor 1-like
TrEMBLI1Q3S75e-42I1Q3S7_ORYGL; Uncharacterized protein
STRINGORGLA06G0179000.18e-43(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.12e-15G-box binding factor 6