PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0185200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 336aa    MW: 36310.2 Da    PI: 6.5094
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0185200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.31.7e-073332055
                AP2 20 rdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       rd      + k+++lg f+ta+ Aa+a+++a+ k++g
  ORGLA06G0185200.1  3 RD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 33
                       56......45************************997 PP
2AP2414.6e-1376124153
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                        s+++GV+ +k  g+W+A+I         +k+++lg ++t+ eAaka+++a+ k 
  ORGLA06G0185200.1  76 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIKC 124
                        789*******.7******77733....25**********77*********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.601141IPR001471AP2/ERF domain
SMARTSM003806.7E-11347IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-9642IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-11641IPR001471AP2/ERF domain
CDDcd000181.12E-2476136No hitNo description
PfamPF008476.4E-976126IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-1776135IPR016177DNA-binding domain
SMARTSM003802.1E-3277140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-1777135IPR001471AP2/ERF domain
PROSITE profilePS5103214.78977134IPR001471AP2/ERF domain
PRINTSPR003671.3E-57889IPR001471AP2/ERF domain
PRINTSPR003671.3E-5116136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MCRDCGKQVY LGGFDTAQAA ARAYDQAAIK FRGVEADINF TLDDYKEDIK KMNNFSKEEF  60
VQVLRRQGAG FVRGSSRFRG VTLHKCGKWE ARIGQLMGKK YVYLGLYDTE MEAAKAYDKA  120
AIKCCGKEAV TNFDTQAYED ELNLQSWDSE LDLELSLGCS GGERAAGEVL HSAPSNQRTS  180
LTFMLPEEEE MTACHRQRSI WARPSLAPAM PDGGAVIRPD QHQHHPSSRN MLLMSQVISS  240
SGGGGGSGRQ GAAELHMRPR HGWSSGGNNW APPYAARPRL PGAEDDDDDD DDSAAAASSG  300
FPMGQVATAS SSSRPSSSSC SSRRSSTAAA TATTGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0185200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429570.0AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.10.0ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH00.0AP24_ORYSJ; APETALA2-like protein 4
TrEMBLI1Q3Y90.0I1Q3Y9_ORYGL; Uncharacterized protein
STRINGORGLA06G0185200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-69AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]