 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA06G0185300.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
AP2 |
| Protein Properties |
Length: 140aa MW: 15670.8 Da PI: 9.9333 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA06G0185300.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 25.2 | 4e-08 | 89 | 112 | 1 | 24 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse 24
s+y+GV++++++grW+++I+ ++
ORGLA06G0185300.1 89 SQYRGVTFYRRTGRWESHIWSVRL 112
78*****************98654 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 140 aa
Download sequence Send
to blast |
MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAVVPEST 60
EQRHVAAAAE QWARPPSRKT RRGPRSRSSQ YRGVTFYRRT GRWESHIWSV RLLSSSCIYT 120
CAYLRTFALL SYTWQLYSVK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003571 | 0.0 | AP003571.4 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0458E02. |
| GenBank | AP003573 | 0.0 | AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01. |
| GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
