PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0205600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 164aa    MW: 18416.3 Da    PI: 9.8663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0205600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51141521128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                        lppGfrFhP+d+elv +yL++k+ +                      v+ +vd++k+ePwdLp+ +  + kewyf+s rd+kyatg+r+nra
  ORGLA06G0205600.1  14 LPPGFRFHPRDDELVLDYLERKLLDGGvggA---AaaaaavtiygcpVMVDVDLNKCEPWDLPEIACVGGKEWYFYSLRDRKYATGQRTNRA 102
                        79*********************99996651...23445667788878***************7666689********************** PP

                NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        t+sgyWkatgkd+++ + kg lvg++ktLvfykgrapkg+kt+Wvmhe+r 
  ORGLA06G0205600.1 103 TESGYWKATGKDRPISR-KGLLVGMRKTLVFYKGRAPKGKKTEWVMHEFRK 152
                        ***************99.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-544156IPR003441NAC domain
PROSITE profilePS5100548.5314164IPR003441NAC domain
PfamPF023653.7E-2615151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSGMNSLSMV EARLPPGFRF HPRDDELVLD YLERKLLDGG VGGAAAAAAA VTIYGCPVMV  60
DVDLNKCEPW DLPEIACVGG KEWYFYSLRD RKYATGQRTN RATESGYWKA TGKDRPISRK  120
GLLVGMRKTL VFYKGRAPKG KKTEWVMHEF RKEGQGDPMK LPLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-481015111139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0205600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636480.0AK063648.1 Oryza sativa Japonica Group cDNA clone:001-119-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881778.11e-119NAC domain-containing protein 21/22
SwissprotQ84TE62e-70NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0GD241e-118A0A0E0GD24_ORYNI; Uncharacterized protein
TrEMBLQ653V81e-118Q653V8_ORYSJ; Os06g0675600 protein
STRINGOS06T0675600-011e-119(Oryza sativa)
STRINGONIVA02G35380.11e-119(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.16e-73NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]