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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
ORGLA06G0223000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
C3H |
| Protein Properties |
Length: 391aa MW: 42691.1 Da PI: 8.6826 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA06G0223000.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31.6 | 2.8e-10 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+e+Cr+f+r G CkyG++C++ H
ORGLA06G0223000.1 5 QEICRNFQR-GSCKYGAQCRYLH 26
79*******.************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MSRRQEICRN FQRGSCKYGA QCRYLHASPH QQQQQQQQAK PNPFGFGTGS RQQQQPSFGS 60
QFQQQQQQQQ KPNPFGFGVQ GANAQSRNAP GPAKPFQNKW VRDPSAPTKQ AEAAQPPQAQ 120
AAHTSCEDPQ SCRQQISEDF KNEAPIWKLT CYAHLRSGPC DIKGDISFEE LRAKAYEEGK 180
QGHSLQSIVE GERNLQNAKL MEFTNLLNSA RPSQTPSFPT MSSFPEVKNN STFGASQTNG 240
PPVFSSFSQI GAATNIGPGP GTTTPGMPAS SPFGHPSSAP LAAPTFGSSQ MKFGVSSVFG 300
NQGSGQPFGS FQAPRFPSSK SPASSVQHRD IDRQSQELLN GMVTPPSVMS EESVGNNKNE 360
NQDDSIWLKE KWAIGEIPLD EPPQRHVSHV F
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK107008 | 0.0 | AK107008.1 Oryza sativa Japonica Group cDNA clone:002-120-E10, full insert sequence. |
