PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0229100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 378aa    MW: 37646.4 Da    PI: 6.3676
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0229100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.66.6e-681233054154
             DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrel......kskkq 83 
                         ++sCqdCGn+akkdC+h RCRtCC+srgf+CathvkstWvpaakrrerqqqlaa+ + aaa++      a+aaskr+rel        +++
  ORGLA06G0229100.1 123 AGTSCQDCGNNAKKDCSHLRCRTCCRSRGFSCATHVKSTWVPAAKRRERQQQLAALFRGAAANNsaaaaaAAAASKRPRELvrtlgrLPSAN 214
                        4579***************************************************999998888788887888999999999999988999* PP

             DUF702  84 salsstklssaeskkeletss....................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        +a+ +t++ss++++  ++t s                    +P+e+s+eavfrcvr+++vd++++elaYqtavsigGh+fkGiL+d+G+++
  ORGLA06G0229100.1 215 TAMVATTTSSGTPPILTPTLSimvtltltppwlcagegdgrFPPELSVEAVFRCVRIGAVDEADAELAYQTAVSIGGHTFKGILRDHGPAD 305
                        *******************99*******************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-62124304IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-24126168IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.5E-20255303IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
GEEEEEAAEE EESAAAEGGG RGGERGGGGD HAIGADSLFL YARGAAAAAA DTAGSGGGGG  60
GIGFQLWHPQ QQAAAAAAAV PHTSQFFSSG VATGVVLGFS SHDGGGGGGH MGGPGGGAGG  120
GRAGTSCQDC GNNAKKDCSH LRCRTCCRSR GFSCATHVKS TWVPAAKRRE RQQQLAALFR  180
GAAANNSAAA AAAAAASKRP RELVRTLGRL PSANTAMVAT TTSSGTPPIL TPTLSIMVTL  240
TLTPPWLCAG EGDGRFPPEL SVEAVFRCVR IGAVDEADAE LAYQTAVSIG GHTFKGILRD  300
HGPADEAAGQ LPPSSAEYHQ LTGQGREESS PAGSSEGVGG GHGAATAATS AAVLMDPYPT  360
PIGAFAAGTQ FFPHNPRT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0229100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043290.0AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054630.0AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642175.11e-164protein SHI RELATED SEQUENCE 1
RefseqXP_025881792.11e-164protein SHI RELATED SEQUENCE 1
TrEMBLI1Q5780.0I1Q578_ORYGL; Uncharacterized protein
STRINGORGLA06G0229100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-50Lateral root primordium (LRP) protein-related