PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0235300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 207aa    MW: 22142.2 Da    PI: 4.9327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0235300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08152176730
                        HHHHHHHHHHHHHHHHHHCTSCC.C CS
                HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                        ++ErrRR+r+N++++ Lr+++Pk +
  ORGLA06G0235300.1 152 MAERRRRKRLNDRLSMLRSVVPKiS 176
                        79********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-7142176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.197145207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6152176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-6152175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAMDGFQ ERHQSTTTVS VLPTFTASYE  60
QPPPAPAAGF DCLSEVYGNA AAAFGPNAGG GGGDMGFLDV VEPKASMVVD GGGLGVCKVE  120
PGLQAEGGFS AAAAAPASKK KRVEGMPSKN LMAERRRRKR LNDRLSMLRS VVPKISKVYR  180
VLSESFCVAI GIASAREMRL DDVCVCE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139159KKRVEGMPSKNLMAERRRRKR
2153160ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0235300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635230.0AK063523.1 Oryza sativa Japonica Group cDNA clone:001-116-H12, full insert sequence.
GenBankAP0036850.0AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04.
GenBankAP0072310.0AP007231.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0535F09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643717.19e-93transcription factor bHLH93
TrEMBLI1Q5E01e-149I1Q5E0_ORYGL; Uncharacterized protein
STRINGORGLA06G0235300.11e-150(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.23e-11beta HLH protein 93