PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0020800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 382aa    MW: 39513 Da    PI: 7.0929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0020800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08317341227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+lC+ +++ G C+ G+ C+++Hg+
  ORGLA07G0020800.1 317 KTALCSKWRK-GRCHNGGACRYSHGE 341
                        8*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.84E-6314346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-9315346IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037315341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526316342IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5317341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.117353382IPR000571Zinc finger, CCCH-type
SMARTSM0035618354381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MADPNGRRRL PTGDPDQANA SPSRRVSAVD GVTGGEGGPT YSHFPPGTYE PTDVAYGIRD  60
AANDERARAR ARHDQGGGAH DHHHDRPRQD QRGEAHLHDL PGEKSEVPDV GPSDQQGKEA  120
SDTDMAPLAA LAKRSYDVNF PPLHEHRAAP VPAPAPAPAG TMGSSSAQVQ GDGAPDNHDH  180
DPRHLPRQDQ RGGAHPDDLH GEKTIGSGSD ILDDSKRGMI NAGPQHGRIT TSNGGSGSGS  240
DKGKGVSYAG DKPASSSSSS SSAGQQGSDT DKTPSAAAAS SYAVNFPPLL PAPAPVPAPA  300
PAPAVAGAMG VANAHHKTAL CSKWRKGRCH NGGACRYSHG EEEQRIVPEM RVGGGGRPCP  360
ELAAAKGWCR YGLNCKYCHG GV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0020800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646504.10.0zinc finger CCCH domain-containing protein 47
SwissprotQ8GW050.0C3H47_ORYSJ; Zinc finger CCCH domain-containing protein 47
TrEMBLI1Q7W60.0I1Q7W6_ORYGL; Uncharacterized protein
STRINGORGLA07G0020800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166371112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]