PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0044500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 236aa    MW: 25484.2 Da    PI: 9.1178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0044500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-0886130554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L++l+P+       K + a++L +  +Y+k L
  ORGLA07G0044500.1  86 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 130
                        99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.50E-1079135No hitNo description
SuperFamilySSF474593.27E-1579140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.79681130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1483141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-686130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1087136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
ASVAAGVTEF GFSQDRDPVQ LAGLFAPVFG AAAGVQPPHL RAPPPPQVFH AQPKPGEGAM  60
AAPQPQQPPA PRPKVRARRG QATDPHSIAE RLRRERIAER MRALQDLVPN TNKTDRAAML  120
DEILDYVKFL RLQVKVLSMS RLGGAGAVAQ LVADIPISVK GEASDSGSKQ QIWEKWSTDG  180
TEKQVAKLME EDIGAAMQFL QSKALCMMPI SLAMAIYDTQ HSQDGHSVKP EPNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0044500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644607.11e-160transcription factor UNE12
SwissprotO227681e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLI1Q8K31e-171I1Q8K3_ORYGL; Uncharacterized protein
STRINGORGLA07G0044500.11e-171(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]