PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA07G0068100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 104aa MW: 11932.3 Da PI: 9.4607

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA07G0068100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.6	3e-16	26	92	1	48
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................t 48 +fYn YA++vGFs++k+++++s++++ +t++tf+C+++ k+++ k+k ORGLA07G0068100.1 26 DFYNGYAYMVGFSTCKASNYHSRKTDVVTRHTFKCNRWRKPSDPKEKglpevdevenclqtnttnpL 92 6******************************************999988877776666655554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-14	26	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
RGGQEANSAH VPSINKVFAD ENEAFDFYNG YAYMVGFSTC KASNYHSRKT DVVTRHTFKC 60 NRWRKPSDPK EKGLPEVDEV ENCLQTNTTN PLVKKRKQNK VVYT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	97	PLVKKRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA07G0068100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004303	1e-172	AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12.
GenBank	AP005246	1e-172	AP005246.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0061L20.
GenBank	AP014963	1e-172	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642362.1	2e-65	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	I1Q989	9e-73	I1Q989_ORYGL; Uncharacterized protein
STRING	ORGLA07G0068100.1	2e-73	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22001	3	5