PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0113100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 199aa    MW: 22097.2 Da    PI: 4.72
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0113100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.42.3e-262582258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58
                       dD y WrKYGqK++ g++f+rsYYrC++  gC+++k+v++s++dp+ +eitY g H++
  ORGLA07G0113100.1 25 DDSYPWRKYGQKDILGARFARSYYRCAQMlGCTARKQVQQSNDDPSRLEITYIGLHTC 82
                       8**************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.7151980IPR003657WRKY domain
SuperFamilySSF1182906.41E-241983IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-252282IPR003657WRKY domain
SMARTSM007748.3E-332484IPR003657WRKY domain
PfamPF031062.6E-242582IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
XXXXXXKSRA DGSSRRIILE LGDRDDSYPW RKYGQKDILG ARFARSYYRC AQMLGCTARK  60
QVQQSNDDPS RLEITYIGLH TCGGDRPSSP APTNPADGPR CDAATSSHRL LPSALQQKLE  120
EHVPAASDDM MMACTPSWLF IPSPACSQSE LLSEGEVPEL RVVRQEPDDP VELVEEHKKP  180
SDADEDSLAL HDSVVPDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1623811575Disease resistance protein RRS1
5w3x_D1e-1623811575Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0113100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052560.0AP005256.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0038F09.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645532.11e-137uncharacterized protein LOC107278742 isoform X1
TrEMBLI1QAI91e-139I1QAI9_ORYGL; Uncharacterized protein
STRINGORGLA07G0113100.11e-140(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-21WRKY DNA-binding protein 55