PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0141300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 235aa    MW: 26245.7 Da    PI: 5.2076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0141300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-0896134445
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 
                        ++  rE+ RRd++N++f eL  +l +    + +K++K++iL 
  ORGLA07G0141300.1  96 SKACREKVRRDKLNERFLELGAVLEPG---KTPKMDKSSILN 134
                        6789**********************9...9*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-983134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-790134No hitNo description
PROSITE profilePS5088810.59492143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-696134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-696135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MASPEGSTWV FDCPLMDDLA AAAGFDAAPA GGFYWTTPAP PQAALQPPPP QQQPVAPATA  60
APNACAEING SVDCEHGKEQ PTNKRPRSES GTRPSSKACR EKVRRDKLNE RFLELGAVLE  120
PGKTPKMDKS SILNDXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0141300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1101960.0AB110196.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 23C4AG047.
GenBankAB1102230.0AB110223.1 Oryza sativa Japonica Group OsMYC1 mRNA for bHLH-HALZ myc like protein, complete cds.
GenBankAK0588890.0AK058889.1 Oryza sativa Japonica Group cDNA clone:001-007-D03, full insert sequence.
GenBankEU8372600.0EU837260.1 Oryza sativa Japonica Group clone KCS222A01 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647705.15e-93transcription factor ILR3
TrEMBLA0A0D3GS301e-91A0A0D3GS30_9ORYZ; Uncharacterized protein
TrEMBLQ7XXQ51e-91Q7XXQ5_ORYSJ; BHLH transcription factor
STRINGOS07T0543000-012e-92(Oryza sativa)
STRINGOBART07G17630.12e-92(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.19e-18bHLH family protein