PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0160900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 432aa    MW: 46208.3 Da    PI: 6.3482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0160900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-30170226259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK vkg e+p+sYY+Ct+ +C v+k+ve+sa d+++v+i+Y+g+H+he
  ORGLA07G0160900.1 170 DDGYNWRKYGQKAVKGGEYPKSYYKCTHLNCLVRKNVEHSA-DGRIVQIIYRGQHTHE 226
                        8****************************************.***************8 PP
2WRKY103.21.4e-32338396159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC vkk+vers e+p++v++tYeg+H h+
  ORGLA07G0160900.1 338 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYLGCDVKKQVERSVEEPNAVITTYEGKHIHD 396
                        59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-27164228IPR003657WRKY domain
SuperFamilySSF1182901.57E-24167228IPR003657WRKY domain
SMARTSM007742.5E-32169227IPR003657WRKY domain
PROSITE profilePS5081123.376170228IPR003657WRKY domain
PfamPF031061.2E-22170226IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-34325398IPR003657WRKY domain
SuperFamilySSF1182903.53E-29331398IPR003657WRKY domain
PROSITE profilePS5081134.762333398IPR003657WRKY domain
SMARTSM007742.3E-38338397IPR003657WRKY domain
PfamPF031064.2E-25339395IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAAARRVAGG GGGSLWGPPQ PPPSTGGGIP QLPAAAAAPV EGLLDAPFSS SSGGGGGGWP  60
PPPPPLSGTA VLIGYPQGNF ETFPQQDLVP LTAQEVHSKC ITFGRAENLS FIPLATSALV  120
SQHTGSSSVN VTPLQEILTS PSQISNVNTE SIGVLQGLPA SSIVLDRPTD DGYNWRKYGQ  180
KAVKGGEYPK SYYKCTHLNC LVRKNVEHSA DGRIVQIIYR GQHTHERPSK RRFKDCGGIS  240
DDLDDFSGTT GTSVRSQPDY DDYCRKPIIP SGTMVAPLVK KIEDGDDQLS GSSDNQDEHD  300
DEVRTADGAS GDASANEGNV PAPGQKIIVS TTSEIDLLDD GYRWRKYGQK VVKGNPYPRS  360
YYKCTYLGCD VKKQVERSVE EPNAVITTYE GKHIHDVPAA RNKSHVVANA SLLQNTKSNT  420
YCTEQSYTTI TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34170399878Probable WRKY transcription factor 4
2lex_A5e-34170399878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0160900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418470.0AY341847.1 Oryza sativa (japonica cultivar-group) WRKY6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646950.20.0probable WRKY transcription factor 3
TrEMBLI1QBW70.0I1QBW7_ORYGL; Uncharacterized protein
STRINGORGLA07G0160900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-75WRKY DNA-binding protein 3