PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA07G0240800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 245aa MW: 25726.1 Da PI: 7.886

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA07G0240800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.2	3.1e-34	38	153	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+da+++++yeA+ar+ dPvyG+ ORGLA07G0240800.1 38 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGS 129 7*******************************998555559********************************************* PP DUF260 77 vgvilklqqqleqlkaelallkee 100 vg+il+lq+q++ l+ +l++l+++ ORGLA07G0240800.1 130 VGTILALQHQVSLLQGQLSVLESQ 153 ****************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.628	37	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-38	38	151	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MHAAQPPGSS KRRGAVERPA SGAGLQAEEA SLAGPGAPCG ACKFLRRRCV PGCVFAPHFS 60 GCGGSGVGAG VGGRGRERGA AEFAAVHRVF GASNVAKLLS RVPAALRRDA ARTVCYEAQA 120 RIADPVYGSV GTILALQHQV SLLQGQLSVL ESQLFNLRVA LASAHPDTPP QHFVVLQPAH 180 SAASTPNQVV VNYDDLPHAV DFMDAEPAAL RGLESLQLSQ PLQREEDEGH RDMNLFSDSV 240 GQRQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-32	34	155	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-32	34	155	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA07G0240800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242468	0.0	AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630092.1	1e-173	LOB domain-containing protein 20
Swissprot	Q9SRV3	5e-46	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A0D3EUJ7	1e-174	A0A0D3EUJ7_9ORYZ; Uncharacterized protein
TrEMBL	I1QE66	1e-174	I1QE66_ORYGL; Uncharacterized protein
STRING	ORGLA07G0240800.1	1e-175	(Oryza glaberrima)
STRING	OBART01G32570.1	1e-175	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14085	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-28	LOB domain-containing protein 20