PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0250200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 169aa    MW: 18036.4 Da    PI: 7.9467
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0250200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY131.21.3e-40121636169
              YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                          e++  vqC+fC t+l+vsvP +s+++vv+v+CGhC+ +ls  ++     ++a+ +    l+    +el       +  +e++   + + +
  ORGLA07G0250200.1  12 LRERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILS-AVNLPPSPVSASIE----LT---PQELDAGPPPGEYSDESSGDDR-EGR 94 
                        5689999***********************************.33322222222222....22...2333333333332222222222.222 PP

              YABBY  98 seklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                            + ++d  +p +   +++PP ++qr Psayn+f+keei+rik+  P+i+h++afs+aaknWah+P+i  +
  ORGLA07G0250200.1  95 ----DAEDDAPAPAAAAvANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQQK 163
                        ....334444444444438**************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-4513162IPR006780YABBY protein
SuperFamilySSF470959.82E-8106159IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.9E-5111162IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSSAARHHCS GLRERLGCVQ CSFCATVLLV SVPCSSVLRV VAVQCGHCSG ILSAVNLPPS  60
PVSASIELTP QELDAGPPPG EYSDESSGDD REGRDAEDDA PAPAAAAVAN KPPGRKQRTP  120
SAYNCFVKEE IKRIKSMEPN ITHKQAFSTA AKNWAHLPRI QQKRGRDSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0250200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740190.0AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647119.11e-122protein YABBY 7 isoform X2
SwissprotA2PZN81e-123YAB7_ORYSJ; Protein YABBY 7
TrEMBLI1QEG01e-121I1QEG0_ORYGL; Uncharacterized protein
STRINGORGLA07G0250200.11e-121(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-26YABBY family protein