PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0264000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 253aa    MW: 26817.2 Da    PI: 4.7336
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0264000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.54.6e-3485184297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 
                        lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q if
  ORGLA07G0264000.1  85 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIF 176
                        79************************99877778***************************************8889*************** PP

             DUF573  90 elskkiWg 97 
                        e+++ iW+
  ORGLA07G0264000.1 177 EIARNIWR 184
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.0E-3186183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLPAGGYPSA AAISFPDADV DDDSDDGDFT DAPLIDPSDP TFPNPASSSA AAAAMTTPAA  60
AGGGSGSGSV GGVGSSSGGG ERRPLFQRLW TEEDEIVILR GFAEFTAARG TAFASHQYDT  120
DPFYEDMRGR LQLGFSKSQL VEKLRRLKRK YRNCVSRLRG SGSAFSFRSP HEQAIFEIAR  180
NIWRPTNKHG RDGDSDDEDA TQVTPAPVPV NTSPNDHNAN YSDNGGLGTP QIAGHATSAG  240
CFRCRQELLD ASV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0264000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683560.0AK068356.1 Oryza sativa Japonica Group cDNA clone:J013146D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.11e-111probable transcription factor At5g28040
TrEMBLI1QEU80.0I1QEU8_ORYGL; Uncharacterized protein
STRINGORGLA07G0264000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.27e-36DNA-binding storekeeper protein-related transcriptional regulator