PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA08G0021700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 430aa MW: 49583 Da PI: 7.4333

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA08G0021700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.7e-22	88	179	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF +r+s+ ++ +++ i++rtf+C +eg+r ++++ ++ +r+etr++C+a++k+++ dg ++v++++ eH+H l ORGLA08G0021700.1 88 DFYNAYASKIGFFIRRSSYHYMGNTKIIKNRTFCCCREGTRGVDTRTealGYGNSFNRPETRCKCQACMKISLI-DGFYQVYHFVPEHSHIL 178 6**************************************999988666567788**************.*************99 PP FAR1 90 a 90 a ORGLA08G0021700.1 179 A 179 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-16	88	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MPNNSMIPPS EASQLHDAGA SPMFLDNTSA TTTSFTNLVE PDDSSAGLGM KQIETDQGAN 60 EDSQTRKASE KMTPKVGMKF NSEQEVYDFY NAYASKIGFF IRRSSYHYMG NTKIIKNRTF 120 CCCREGTRGV DTRTEALGYG NSFNRPETRC KCQACMKISL IDGFYQVYHF VPEHSHILAT 180 KSQAHQLRSQ RKLNEAQVAS VEVAKSVGIS TKAVVDLLAK QSCGYENLGF TRVDMKNKLY 240 SKRSLQTKQE EEEEFIKAWH QLLDKYELQQ NKWLQRIFDK RHQWALVYGR NTFFADMSTT 300 QRNESFNSEL KGYISVKYDM LTFFEHFDRL LGDKRYEEVK CDFRATQSTP RPKAELRILR 360 DVVEVYTPAV YKIFEEEVMQ TLNCDIFYCG DVDEQKVYKI KSHEDIEKCL KIRCNPDLET 420 SSSPQGVKEN

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MPNNSMIPPS EASQLHDAGA SPMFLDNTSA TTTSFTNLVE PDDSSAGLGM KQIETDQGAN  60
EDSQTRKASE KMTPKVGMKF NSEQEVYDFY NAYASKIGFF IRRSSYHYMG NTKIIKNRTF  120
CCCREGTRGV DTRTEALGYG NSFNRPETRC KCQACMKISL IDGFYQVYHF VPEHSHILAT  180
KSQAHQLRSQ RKLNEAQVAS VEVAKSVGIS TKAVVDLLAK QSCGYENLGF TRVDMKNKLY  240
SKRSLQTKQE EEEEFIKAWH QLLDKYELQQ NKWLQRIFDK RHQWALVYGR NTFFADMSTT  300
QRNESFNSEL KGYISVKYDM LTFFEHFDRL LGDKRYEEVK CDFRATQSTP RPKAELRILR  360
DVVEVYTPAV YKIFEEEVMQ TLNCDIFYCG DVDEQKVYKI KSHEDIEKCL KIRCNPDLET  420
SSSPQGVKEN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA08G0021700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004381	0.0	AP004381.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0025F03.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I1QFL6	0.0	I1QFL6_ORYGL; Uncharacterized protein
STRING	ORGLA08G0021700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-26	FAR1-related sequence 5