PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0039300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 182aa    MW: 20140.2 Da    PI: 4.8349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0039300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.2e-173887255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++  + ++ g
  ORGLA08G0039300.1 38 EYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDLSAISISG 87
                       588******.**********865...5*******************99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-183795IPR016177DNA-binding domain
CDDcd000181.04E-203779No hitNo description
PROSITE profilePS5103220.4423896IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-253895IPR001471AP2/ERF domain
SMARTSM003809.6E-2638102IPR001471AP2/ERF domain
PRINTSPR003677.9E-93950IPR001471AP2/ERF domain
PfamPF008473.2E-93985IPR001471AP2/ERF domain
PRINTSPR003677.9E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MADAVEQHHQ QEEIAAAMTT PTPQQMMMRR RRARASSEYL GVRRRPWGRY AAEIRNPYTK  60
ERHWLGTFDT AEEAAVAYDL SAISISGAAA ARTNFLYPDM HHHHPSPPQH ALSPAVPPPP  120
PPPPPSPLYD DDNADDDYQL QAAAAAEEVE AGDDESLTIA TILQSFQYQQ SVPPASSGSM  180
FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1637951371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0039300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417620.0AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence.
GenBankAP0051640.0AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649703.16e-68ethylene-responsive transcription factor LEP
TrEMBLI1QG421e-129I1QG42_ORYGL; Uncharacterized protein
STRINGORGLA08G0039300.11e-130(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-25ERF family protein