PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0081300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 159aa    MW: 18034.9 Da    PI: 7.772
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0081300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.81.8e-081011342154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp++e++++L +++gL+ +q+ +WF N+R +
  ORGLA08G0081300.1 101 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 134
                        569*****************************87 PP
2ELK28.14.6e-105576122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELKh+L+++Y+++L+++++E++
  ORGLA08G0081300.1 55 ELKHELKQGYKEKLIDIREEIL 76
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121310.0395575IPR005539ELK domain
SMARTSM011880.0045576IPR005539ELK domain
PfamPF037898.5E-55576IPR005539ELK domain
PROSITE profilePS5007111.74275138IPR001356Homeobox domain
SMARTSM003894.8E-1177142IPR001356Homeobox domain
SuperFamilySSF466891.07E-1677142IPR009057Homeodomain-like
CDDcd000861.40E-1178139No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2582139IPR009057Homeodomain-like
PfamPF059202.8E-1895134IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
ASPGEGTGAT MSDGEDDQAD SEANMYDPSL DGADNMGFGL PTESERSLME RVRQELKHEL  60
KQGYKEKLID IREEILRKRR AGKLPGDTTS TLKAWWQSHA KWPYPTEEDK ARLVQETGLQ  120
LKQINNWFIN QRKRNWHSNP SSSTSVKTKR KSNAGDNNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-1478142872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0081300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345860.0CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence.
GenBankCT8345870.0CT834587.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN088H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696167.11e-114PREDICTED: homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N41e-116KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0E0ATH41e-115A0A0E0ATH4_9ORYZ; Uncharacterized protein
STRINGOBART08G09500.11e-115(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.14e-87KNOTTED1-like homeobox gene 3