PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0084900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 231aa    MW: 25007.5 Da    PI: 11.6289
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0084900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001173195123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC+ Cg+sFs+   L  H  +H
  ORGLA08G0084900.1 173 FKCSVCGRSFSSYQALGGHKTSH 195
                        89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-5172199No hitNo description
SMARTSM003550.0081173195IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-12173196IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.78173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAFLGQSRLY DGISWNSHLS MAFLVPPVSV ATSAPSLSFP SSPFLLLSLS LSLFSASRPV  60
AGAKAARVRR ERRRRRRRRR RVANGETEAL HAAVLKEEEQ QHEVEEAAVV TSSSATSGEE  120
GGHLPQGWAK RKRSRRQRSE EENLALCLLM LALGGHHRVQ APPPLSAPVG AEFKCSVCGR  180
SFSSYQALGG HKTSHRFKLP TPPASPVLAP ASSEVQSPLA FSPRNSAAAR I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16979RERRRRRRRRR
27280RRRRRRRRR
37380RRRRRRRR
47480RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0084900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649250.11e-75zinc finger protein 1, partial
SwissprotQ424302e-36ZFP1_WHEAT; Zinc finger protein 1
TrEMBLI1QHE81e-161I1QHE8_ORYGL; Uncharacterized protein
STRINGORGLA08G0084900.11e-162(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.18e-10zinc-finger protein 1