PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0133100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 209aa    MW: 23328.5 Da    PI: 4.0425
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0133100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.21.8e-05971351145
                        HHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHH CS
           Homeobox  11 qleeLeelFeknrypsaeereeLAkkl....gLterqVk 45 
                        ++e+Le+++  +++p+ ++r++L  ++    +++ +q+k
  ORGLA08G0133100.1  97 EVEALERVYTDCPKPTSARRQQLLCECpilaNIEPKQIK 135
                        689************************999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF635621.57E-241102IPR006110RNA polymerase, subunit omega/K/RPB6
Gene3DG3DSA:3.90.940.103.5E-271297IPR012293RNA polymerase subunit, RPB6/omega
PfamPF011929.1E-105997IPR006110RNA polymerase, subunit omega/K/RPB6
CDDcd000860.0014295135No hitNo description
Gene3DG3DSA:1.10.10.603.8E-498135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAEDDYNDMD MGYEDEPPEP EIEEGAEEEP ENNNEDAVDD VVGAEDDREQ EKTARPWKTS  60
KYMTKYERVR ILGTRALQIS MNAPVMVELE GGTDPLEVEA LERVYTDCPK PTSARRQQLL  120
CECPILANIE PKQIKFSLFS VTKTLVMAVL GTQVAAHHNG HGMSHENHTQ ESESSVEQHD  180
PESQDDISIK ATPADESPPE ETSAAPTKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3h0g_F2e-155910971121DNA-directed RNA polymerases I, II, and III subunit RPABC2
3h0g_R2e-155910971121DNA-directed RNA polymerases I, II, and III subunit RPABC2
5u0s_f2e-155910971121RNA polymerase II subunit Rpb6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0133100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218071e-140AK121807.1 Oryza sativa Japonica Group cDNA clone:J033097N04, full insert sequence.
GenBankCT8338541e-140CT833854.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA035N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1QIT01e-152I1QIT0_ORYGL; Uncharacterized protein
STRINGORGLA08G0133100.11e-153(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2375144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.19e-17HD-ZIP family protein