PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0157100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 220aa    MW: 23745.7 Da    PI: 7.7998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0157100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-132167354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  ORGLA08G0157100.1 21 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 67
                       58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9291867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.20E-122168No hitNo description
Gene3DG3DSA:4.10.280.104.2E-142168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-112167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-112473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-4123190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVTDGECSAA AARKGGSPAV RSHSEAERKR RQRINAHLAT LRTLVPSASR MDKAALLGEV  60
VRHVRELRCR ADDATEGADV VVPGEGDEVG VEDEEDDEGE RDEGCYVVGG GDRRWRRRVR  120
AWVCCADRPG LMSDLGRAVR SVSARPVRAE VATVGGRTRS VLELDVVVAS DAADNDRAVA  180
LSALRAALRT VLLNREELLA AAATDGYKRP RFSPRCSSLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0157100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039170.0AP003917.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1666_A04.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649548.11e-116transcription factor AIG1
TrEMBLI1QJH01e-150I1QJH0_ORYGL; Uncharacterized protein
STRINGORGLA08G0157100.11e-150(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-14bHLH family protein