PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA08G0161200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 320aa MW: 35593.8 Da PI: 6.4239

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA08G0161200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.4	5.1e-20	30	114	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W + e+++L++a++e+++rlrrg+lk+++Weev++ + + ++++ +qC++k+e+l+kry+ + ++ s +pyf+++e ORGLA08G0161200.1 30 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 114 ***********************************999987777889*************988776664......68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.5E-18	28	116	No hit	No description
SMART	SM00595	4.0E-5	37	121	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MAQEAASAAA AGEEGALPQR RRKSAPGQPW AHMETMHLLD AYEERWTRLR RGQLKAQQWE 60 EVAADVAARC AASGAALRKT GTQCRHKLEK LRKRYRIEGA RPVTSLWPYF RRMERLERGP 120 LPVSSAFPPP PPAASPPAAA SDEDDDDDDD DEEDDEEEEE VEEPIPRNNT RSINGILRDS 180 GGGGGGFSGF APRPPPQQPP PSFAMLSTAP PRKRVPYEAF QAKVAMADKV KEEEPPPVAT 240 RPGGGTNEQL SAVVRDFGQG IMRLERRRME MQWEIDRGWK ETEARHNRML LDAQRHLHEA 300 LAATPPPLKK ARREHGGDGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	23	QRRRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA08G0161200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005918	0.0	AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648379.1	1e-146	trihelix transcription factor ASIL2
TrEMBL	I1QJL1	0.0	I1QJL1_ORYGL; Uncharacterized protein
STRING	ORGLA08G0161200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-19	Trihelix family protein