PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0165700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 607aa    MW: 68610.6 Da    PI: 5.9148
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0165700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06520546127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+ C+++ rtG+C+ Gd C +aH++
  ORGLA08G0165700.1 520 PKTVMCPDWCRTGHCSSGDGCEYAHSQ 546
                        79***********************97 PP
2zf-CCCH32.31.7e-10558583126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y+te+Cr+++++  C+yGd+C++ H+
  ORGLA08G0165700.1 558 YRTEPCRYWLAGKGCWYGDKCRYKHS 583
                        89*********99************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.873519547IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-8519551IPR000571Zinc finger, CCCH-type
SMARTSM003560.011519546IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-11521550IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-9555585IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7556586IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868557585IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7557584IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-8558583IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
QADMKQEEDE LAVDPGVGAV CDPVTKLRFE AIVCLLDRIP ITLQQIDMFG QDVAFRTKRI  60
GNIEALLDFL KGSAAATWGA RAGAGEPIDA SSPELHRLVE DAETAYRDVR GLQPRMVVQM  120
PRVFHKVCLP KLHQLLVIAR RLLAQNVALR RLLLQPVGCD VSPMALAEAA VSSDDFERHG  180
RNKVVIDEFG YEDLLRRRHT GHESQNDADD AEQHGREVRE GEYEGLILMR HRDTSHELLQ  240
DDARRRRADA EAEQQGGDGE VRDEYEDYLC RQLGAVYSGP DQIYEHDMRG PEPAHSPNTP  300
DQIYVPCERM LPYPSNCDNA EDRIHMACLA LKNLVKDMEG IYSPRGTLWQ YLEDVISLAH  360
ALFLENTKLH RFTDQASHQD LPLQPPQGFP FQQQPQHDGY QQPGVPFQQP QQGGYYGHGQ  420
GIMFQRGGYL QDVPFQHWQW QQGGYGQGFM FPQAQHQGGY GQGFLSEQPL PGDPSFMNMQ  480
APYDGDGGVL FQKPQHYHHG HVPSEKGAIQ AKGKQKMREP KTVMCPDWCR TGHCSSGDGC  540
EYAHSQDELR VIDAGPKYRT EPCRYWLAGK GCWYGDKCRY KHSTDXLGSH CMSIHSXQVL  600
HMIDLLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0165700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046200.0AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBankAP0047620.0AP004762.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686H11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883283.10.0putative zinc finger CCCH domain-containing protein 57 isoform X2
SwissprotA3BUD20.0C3H57_ORYSJ; Putative zinc finger CCCH domain-containing protein 57
TrEMBLI1QJQ60.0I1QJQ6_ORYGL; Uncharacterized protein
STRINGORGLA08G0165700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2025277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-15C3H family protein