PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0184900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 189aa    MW: 20296.3 Da    PI: 9.1806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0184900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.3e-161365255
                AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                       g +GVr++  +grW+AeIr+p  +g +  +r ++g+f ++  Aa a++aa  +++g
  ORGLA08G0184900.1 13 GLRGVRRRL-WGRWAAEIRVP--RGhRAaARLWIGTFPSPAAAALAYDAALYCFHG 65
                       579***877.**********9..455447************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.1141377IPR001471AP2/ERF domain
PfamPF008471.9E-111465IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-141469IPR016177DNA-binding domain
PRINTSPR003672.0E-61425IPR001471AP2/ERF domain
SMARTSM003805.0E-141583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-191578IPR001471AP2/ERF domain
PRINTSPR003672.0E-63955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MVPPAAHAPK NLGLRGVRRR LWGRWAAEIR VPRGHRAAAR LWIGTFPSPA AAALAYDAAL  60
YCFHGGAPPG NRAFNFPHAP RLRIDDRRRH ALTPGHVRAI AERYAHDVGS VLFRPLPPPP  120
PPVAAAAVPV FAAPAPPMAP APANHAADPY YCNEPDTTTD EDVMAAADRL LSMDIEEVAA  180
LIAIVQQGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0184900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082080.0AK108208.1 Oryza sativa Japonica Group cDNA clone:002-140-D07, full insert sequence.
GenBankAP0038650.0AP003865.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1081_B12.
GenBankAP0055090.0AP005509.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1003_A09.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649451.11e-131ethylene-responsive transcription factor ERF015
TrEMBLA0A0E0AXT41e-129A0A0E0AXT4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QLD31e-129A0A0E0QLD3_ORYRU; Uncharacterized protein
TrEMBLA2YX621e-129A2YX62_ORYSI; Uncharacterized protein
TrEMBLI1QK981e-129I1QK98_ORYGL; Uncharacterized protein
TrEMBLQ84QR51e-129Q84QR5_ORYSJ; Os08g0521600 protein
STRINGOGLUM08G22130.11e-130(Oryza glumipatula)
STRINGORUFI08G23370.11e-130(Oryza rufipogon)
STRINGOS08T0521600-011e-130(Oryza sativa)
STRINGORGLA08G0184900.11e-130(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555