PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0220200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 236aa    MW: 24486.2 Da    PI: 5.6332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0220200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-194395155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                       + ++GVr++ + grWv+e+r+p   g +  r ++g+f+taeeAa+a++aa+++l g
  ORGLA08G0220200.1 43 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEEAARAHDAAMLALCG 95
                       579******************9...5445***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-144395IPR001471AP2/ERF domain
SMARTSM003803.6E-2144109IPR001471AP2/ERF domain
PROSITE profilePS5103220.45544103IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1844105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-2844105IPR001471AP2/ERF domain
PRINTSPR003672.6E-54556IPR001471AP2/ERF domain
CDDcd000181.48E-1957105No hitNo description
PRINTSPR003672.6E-56985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEKNTTAMGQ LMSSSATTAA TATGPASPKR PAGRTKFQET RHPVFRGVRR RGRAGRWVCE  60
VRVPGSRGDR LWVGTFDTAE EAARAHDAAM LALCGASASL NFADSAWLLH VPRAPVASGH  120
DQLPDVQRAA SEAVAEFQRR GSTAATATAT SSDAASTAPP SSSPVLSPND DNASSASTPA  180
VAAALDHGDM FGGMRADLYY ASLAQGLLIE PPPPPTTAEG FCDDEGCGGA EMELWS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0220200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041630.0AP004163.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1323_A06.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649414.11e-168dehydration-responsive element-binding protein 1J
SwissprotA2YXQ71e-169DRE1J_ORYSI; Dehydration-responsive element-binding protein 1J
SwissprotQ0J3Y71e-169DRE1J_ORYSJ; Dehydration-responsive element-binding protein 1J
TrEMBLI1QLA11e-169I1QLA1_ORYGL; Uncharacterized protein
STRINGORGLA08G0220200.11e-169(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.17e-22C-repeat/DRE binding factor 2