PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0227400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 232aa    MW: 24835.4 Da    PI: 10.2589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0227400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.91.5e-30191551128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdk 90 
                        lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p +  +++ + yfF+ r +++ +g+r++ +++ g Wk a g+dk
  ORGLA08G0227400.1  19 LPPGFRFHPTDEELVVQYLRRKAFGMPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPHAA-RGRRQQVTASGGCWKqAGGRDK 106
                        79****************************.8899998***********43..456789*****99875.68899999999****4556899 PP

                NAM  91 evlsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                        +v+++   +++lvg+kk +vf          + a  +    Wvmhey+l
  ORGLA08G0227400.1 107 PVVVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWVMHEYSL 155
                        999988988999**********8854433222333333667******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-4014179IPR003441NAC domain
PROSITE profilePS5100540.4119179IPR003441NAC domain
PfamPF023651.3E-2020155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERAAAAAPV VMRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGMPLPAAV IPDLHNLFKL  60
DPWDIPGASS DGDKYFFAVR PHAARGRRQQ VTASGGCWKQ AGGRDKPVVV ARCGGSHLVG  120
VKKGMVFVPR QGRKAPAAAA AAAGGGCWVM HEYSLALPMH KKGCLAEAEE WVVCRIFQRS  180
SSGSRSPRRP DNDMRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-291918517171NO APICAL MERISTEM PROTEIN
1ut4_B1e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_A1e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_B1e-291918517171NO APICAL MERISTEM PROTEIN
4dul_A1e-291918517171NAC domain-containing protein 19
4dul_B1e-291918517171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0227400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615430.0AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence.
GenBankAK0687760.0AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence.
GenBankAK1047660.0AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence.
GenBankEU8469970.0EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650414.11e-125NAC domain-containing protein 18
TrEMBLI1QLH31e-168I1QLH3_ORYGL; Uncharacterized protein
STRINGORGLA08G0227400.11e-168(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-35NAC domain containing protein 83