PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0026100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 1093aa MW: 127784 Da PI: 9.4617

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0026100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	56.4	5.8e-18	926	991	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 Dgy+WrKYGqK++ +++++r+YYrCt + gC+++k v++ ++d++ + ++ Y g+H+++ ORGLA09G0026100.1 926 DGYEWRKYGQKSISKTKHSRNYYRCTNQkgqGCMATKTVQQIENDNSsnsvvkLYNVDYFGRHTCK 991 9************************99999*****999988751111114567799999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-20	910	991	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-18	919	992	IPR003657	WRKY domain
SMART	SM00774	7.7E-27	924	992	IPR003657	WRKY domain
PROSITE profile	PS50811	15.526	926	970	IPR003657	WRKY domain
Pfam	PF03106	2.0E-19	926	991	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence Send to blast
MSAIESFCCV DHRMIIQEMK REHGLRLNNV PILRLNNVQS DHISVLLGVP QHLTKIIRSV 60 VIFNSPVQFA RSISFKSIVL SPVRNVLVFH VIFFHLNPXL SVRGPTIIAK HEPRLKQVEM 120 NSSXCRIPLL VFFCTXCMDN RXNPYACXHR PLPKNNARRQ XTVSTVGPHT SIADPSTXNA 180 QKSXKXTTKV KPIKQLYNNY IXLFILXLXN NPTYHSCFNF FKVVNKYLMS CTYFNFKLTL 240 FSILLDXFSI FFPSQLCYHI FLXNSKXTKF LYSFFPTQIF SLINFHQSFX RQXCIQNITL 300 NVICXEKTLE DEVAYFLDTS NLYTITKINS QEILVAPPLL KKFXRLTQAE GGRRHIXRKL 360 TLVPIGVTNW VXISAXSLVP VGNRGADDPF PLRLXTGAKG TFXSXXXXXX XXXXXXXXXX 420 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 480 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 540 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 600 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 660 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 720 XXXXXXXXXX XXXSYARHGF LLFPHLFTCH IIFYPRXQLI XCYGHHPSHW VRNGLHNNQE 780 XKXWDSWIKG EKREMIEWEF NLKTPSIGCI VSTHSVYMIW QVXKLLDSFW VGMAYVKGPG 840 TPKAVFGRHA KQSTYYCIIN XVFVIFFPKI DXYDFLSNFH IKFFCKKRTV XQFEKRACEK 900 REREVGKGRK NAQHTGSVVT ATPDYDGYEW RKYGQKSISK TKHSRNYYRC TNQKGQGCMA 960 TKTVQQIEND NSSNSVVKLY NVDYFGRHTC KFGNEMVCPD IVETDSPKYS SINDKYASTR 1020 LTNHSDDHQP ENDMKPENLF AVPDMSLFSE NMWDIIFEDV TMNSTFSLEQ EAKDSWIKHQ 1080 QESTIHLWAD ELC

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence Send to blast

MSAIESFCCV DHRMIIQEMK REHGLRLNNV PILRLNNVQS DHISVLLGVP QHLTKIIRSV  60
VIFNSPVQFA RSISFKSIVL SPVRNVLVFH VIFFHLNPXL SVRGPTIIAK HEPRLKQVEM  120
NSSXCRIPLL VFFCTXCMDN RXNPYACXHR PLPKNNARRQ XTVSTVGPHT SIADPSTXNA  180
QKSXKXTTKV KPIKQLYNNY IXLFILXLXN NPTYHSCFNF FKVVNKYLMS CTYFNFKLTL  240
FSILLDXFSI FFPSQLCYHI FLXNSKXTKF LYSFFPTQIF SLINFHQSFX RQXCIQNITL  300
NVICXEKTLE DEVAYFLDTS NLYTITKINS QEILVAPPLL KKFXRLTQAE GGRRHIXRKL  360
TLVPIGVTNW VXISAXSLVP VGNRGADDPF PLRLXTGAKG TFXSXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  660
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  720
XXXXXXXXXX XXXSYARHGF LLFPHLFTCH IIFYPRXQLI XCYGHHPSHW VRNGLHNNQE  780
XKXWDSWIKG EKREMIEWEF NLKTPSIGCI VSTHSVYMIW QVXKLLDSFW VGMAYVKGPG  840
TPKAVFGRHA KQSTYYCIIN XVFVIFFPKI DXYDFLSNFH IKFFCKKRTV XQFEKRACEK  900
REREVGKGRK NAQHTGSVVT ATPDYDGYEW RKYGQKSISK TKHSRNYYRC TNQKGQGCMA  960
TKTVQQIEND NSSNSVVKLY NVDYFGRHTC KFGNEMVCPD IVETDSPKYS SINDKYASTR  1020
LTNHSDDHQP ENDMKPENLF AVPDMSLFSE NMWDIIFEDV TMNSTFSLEQ EAKDSWIKHQ  1080
QESTIHLWAD ELC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0026100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005829	0.0	AP005829.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1008E06.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I1QMI2	0.0	I1QMI2_ORYGL; Uncharacterized protein
STRING	ORGLA09G0026100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19315	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66550.1	3e-15	WRKY DNA-binding protein 67