PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0030300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 232aa    MW: 26018.6 Da    PI: 8.101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0030300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.8e-17113160354
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                        y+G+r+++ +grW++eIrdp+    +  r++lg+f+tae+Aa+a++   ++++
  ORGLA09G0030300.1 113 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 160
                        9*******.**********75....44*******************8777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.3E-37112175IPR001471AP2/ERF domain
PROSITE profilePS5103222.484112169IPR001471AP2/ERF domain
PRINTSPR003673.6E-11113124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-30113170IPR001471AP2/ERF domain
PfamPF008472.7E-9113153IPR001471AP2/ERF domain
CDDcd000189.30E-26113168No hitNo description
SuperFamilySSF541712.88E-20113170IPR016177DNA-binding domain
PRINTSPR003673.6E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRRRVSSSPS SSSSSSPARH HKTRRSRRKL AVDEDWEAAF REFLSRDHDD DDDDDGQHVV  60
LAPLIRGSDK CVHGHEVVAS TVGGGASGGR RRADDDDGER RRRRRREKRS YPYRGIRQRP  120
WGRWASEIRD PVKGIRVWLG TFDTAEGAAR AYDDEVRRIY GGNAKTNFPP SPPPPPPPPE  180
QPAAERSPST TTPTTAEDSG DSRILIECCS DDLMDSLLAA FDMTTGDMRF WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-18113169360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-18113169663ATERF1
3gcc_A8e-18113169663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189105RRRADDDDGERRRRRRR
298106ERRRRRRRE
399105RRRRRRR
499106RRRRRRRE
5100108RRRRRREKR
6102107RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0030300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0900560.0AC090056.2 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence.
GenBankAK0653440.0AK065344.1 Oryza sativa Japonica Group cDNA clone:J013007H05, full insert sequence.
GenBankAP0057050.0AP005705.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0453B09.
GenBankAP0067580.0AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU8475190.0EU847519.1 Oryza sativa Japonica Group clone OsEP3 AP2/ERF domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651344.11e-101ethylene-responsive transcription factor 1-like
TrEMBLI1QMM41e-165I1QMM4_ORYGL; Uncharacterized protein
STRINGORGLA09G0030300.11e-165(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP179721010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.18e-26ERF family protein