PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0030400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 254aa    MW: 27647.6 Da    PI: 4.6213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0030400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-20102151356
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +grW++eIrdp+    + +r++lg+f+ta eAa+a++a +++++g+
  ORGLA09G0030400.1 102 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTFDTAAEAARAYDAEARRIHGH 151
                        9*******.**********75....44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.011101158IPR001471AP2/ERF domain
SMARTSM003809.5E-37101164IPR001471AP2/ERF domain
PfamPF008471.5E-12102151IPR001471AP2/ERF domain
PRINTSPR003672.1E-11102113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-31102158IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22102159IPR016177DNA-binding domain
CDDcd000181.96E-16104157No hitNo description
PRINTSPR003672.1E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MCGGALIPND YGDKPPPPPS ESSEWDATTK MKKKKKRVGG GDDDWEAAFR EFIAGDDDDD  60
DGGVSMFPSG AGTMETTTEV APAAAVVERP RRRRRVRRSY PYRGVRQRPW GRWASEIRDP  120
VKGARVWLGT FDTAAEAARA YDAEARRIHG HKARTNFPPD EPPLPAPSQA PFCFLLDDDD  180
DDGVARGNSP ASSSAPDSAS ACTTSSTVAS GERGDELILL ECCSDDVMDS LLAGFDVSSE  240
PRSVLVWFLQ FFVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-19102158663ATERF1
3gcc_A9e-19102158663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RPRRRRRVR
29097RRRRRVRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0030400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057050.0AP005705.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0453B09.
GenBankAP0067580.0AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610635.11e-113ethylene-responsive transcription factor 1-like
TrEMBLI1QMM50.0I1QMM5_ORYGL; Uncharacterized protein
STRINGORGLA09G0030400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.16e-19ERF family protein