PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0057100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 183aa MW: 19570.6 Da PI: 5.2579

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0057100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	67.1	3.4e-21	2	51	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g ORGLA09G0057100.1 2 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 51 59****9.******955...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.54E-30	1	61	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.7E-33	2	61	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-23	2	61	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.354	2	59	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-35	2	65	IPR001471	AP2/ERF domain
Pfam	PF00847	3.2E-15	3	51	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	3	14	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	25	41	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDQAAYRLR GDAARLNFPD 60 NAASRGPLHA SVDAKLQTLC QNIAAAKNAK KSSVSASAAA TSSAPTSNCS SPSSDDASSC 120 LESADSSPSL SPSSAATTAE TPATVPEMQQ LDFSEAPWDE AAAFALTKYP SYEIDWDSLL 180 AAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-21	1	59	4	63	ATERF1
3gcc_A	1e-21	1	59	4	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0057100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612138.1	1e-129	ethylene-responsive transcription factor RAP2-13
Swissprot	Q8H1E4	9e-55	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A0E0IIH6	1e-127	A0A0E0IIH6_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0QQI7	1e-127	A0A0E0QQI7_ORYRU; Uncharacterized protein
TrEMBL	A2Z0H9	1e-127	A2Z0H9_ORYSI; Uncharacterized protein
TrEMBL	I1QNE2	1e-128	I1QNE2_ORYGL; Uncharacterized protein
TrEMBL	Q6H5L8	1e-127	Q6H5L8_ORYSJ; AP2-EREBP transcription factor
TrEMBL	Q7XZP8	1e-127	Q7XZP8_ORYSJ; DRE binding factor 2
STRING	ORUFI09G08380.1	1e-128	(Oryza rufipogon)
STRING	ONIVA09G06980.1	1e-128	(Oryza nivara)
STRING	ORGLA09G0057100.1	1e-129	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP382	35	203

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	2e-33	related to AP2 4

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]