PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0104900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 173aa    MW: 19689.2 Da    PI: 8.7794
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0104900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.31.4e-1277132358
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                        e +r rr+++NRe+ArrsR RK+ ++ eL+  v  L   N++L +el++    ++ 
  ORGLA09G0104900.1  77 EERRRRRMISNRESARRSRMRKQRQLSELRGQVVHLRDANRRLLDELNQAMRGCSD 132
                        67899******************************************998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-1575139IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-1075128No hitNo description
PfamPF001707.6E-1076131IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.55377128IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-1179128No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
CDDcd147024.38E-1484128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MLHHHYHGEV ASLHCLSPPS LPFSSHYHSN MITMAPSPFH FPAATCEPIQ ELLPVVAGNR  60
PAGSGSTDDA YQMAAEEERR RRRMISNRES ARRSRMRKQR QLSELRGQVV HLRDANRRLL  120
DELNQAMRGC SDVHCENARL RKESAELQTK LEHLMQAQKN NTSPSSSQPC ENI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0104900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083190.0AK108319.1 Oryza sativa Japonica Group cDNA clone:002-141-G12, full insert sequence.
GenBankAP0061690.0AP006169.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612405.11e-125basic leucine zipper 8
TrEMBLA0A0D3H8031e-124A0A0D3H803_9ORYZ; Uncharacterized protein
TrEMBLI1QPS01e-124I1QPS0_ORYGL; Uncharacterized protein
STRINGORGLA09G0104900.11e-125(Oryza glaberrima)
STRINGOBART09G13750.11e-125(Oryza barthii)
STRINGOBART09G13760.11e-125(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.12e-10basic leucine-zipper 43