PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0106100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 229aa MW: 23725.3 Da PI: 9.4724

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0106100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	5e-38	42	98	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss ORGLA09G0106100.1 42 DPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGSRKSSTSS 98 57**************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	41	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	42	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	43	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MQEAGRRPAP QFAGVDLRRP KGYPAAAQLT PAAEEAAAGV GDPCPRCESR DTKFCYYNNY 60 NTSQPRHFCK SCRRYWTKGG SLRNVPVGGG SRKSSTSSSS SSAAASSSSS PSSPAKSPKR 120 SKNSKRRRVS PPPPQPAPTP PPPTTADAAD VAAPTAPEAT TKKAPEDLTA AAATQPAVAL 180 GLGVADGGGG GKEHLDTSPF EWPSGCDLGP YWPTGVFADT DPSLFLNLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	128	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00672	SELEX	Transfer from GRMZM2G009406	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0106100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610919.1	1e-95	dof zinc finger protein MNB1A
Swissprot	P38564	6e-56	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	I1QPT2	1e-161	I1QPT2_ORYGL; Uncharacterized protein
STRING	ORGLA06G0286500.1	1e-162	(Oryza glaberrima)
STRING	ORGLA09G0106100.1	1e-162	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-26	DOF zinc finger protein 1

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]