PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0114000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 393aa    MW: 40729 Da    PI: 8.504
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0114000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.95.1e-4273149177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +CqvegC +dls +k y+ rhkvC +h+k p v+v+gleqrfCqqCsrfh+l efD+ek+sCrrrLa+hnerrrk++
  ORGLA09G0114000.1  73 RCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRKPT 149
                        6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3370135IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.65871148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-4072151IPR004333Transcription factor, SBP-box
PfamPF031101.5E-3274147IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MATGGSGGGG GGGGGGDDVH GLKFGKKIYF EQDAAASASA AAVESSSTSS GGGGKKGKGV  60
AAAAAPPPPP PPRCQVEGCG VDLSGVKPYY CRHKVCYMHA KEPIVVVAGL EQRFCQQCSR  120
FHQLPEFDQE KKSCRRRLAG HNERRRKPTP GPLSSRYGRL AASFHEEPGR SRSFVVDFSY  180
PRVPSSVRDA WPAIQPGDRM SGSIQWQGGH ELHPHRSAVA GYGDHHAFSS HGGSAAGAPM  240
LHHPAFELTS GGCLAGVATD SSCALSLLST QPWDTTQSTS SHNRSPPMSS TASAFGGGNN  300
PVSPSVMASN YMAASPGWNS SSRGHDGARN VHLPPPHGVA LNEVPPGSVH HGHFSGELEL  360
ALQGGAPSNR PEAEHGSGSG AFSHSPNAMN WSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28741471184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0114000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635610.0AK063561.1 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610961.10.0squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0570.0SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLI1QQ110.0I1QQ11_ORYGL; Uncharacterized protein
STRINGORGLA09G0114000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-44squamosa promoter binding protein-like 9