PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0133000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 218aa    MW: 23266.9 Da    PI: 4.8485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0133000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.97e-153187155
                AP2  1 sgykGVrwdkkrgr......WvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr++   gr      Wv+e+r+p   g +  r +lg+f tae Aa+a++aa+++l+g
  ORGLA09G0133000.1 31 PVYRGVRRRG--GRpgaagrWVCEVRVP---GaRGSRLWLGTFATAEAAARAHDAAALALRG 87
                       679***8765..55556666*******9...6666*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-103187IPR001471AP2/ERF domain
PROSITE profilePS5103222.1553295IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-183297IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-273297IPR001471AP2/ERF domain
SMARTSM003806.7E-1932101IPR001471AP2/ERF domain
PRINTSPR003672.6E-53344IPR001471AP2/ERF domain
PRINTSPR003672.6E-56177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEVEEAVYRT VWSEPPKRPA GRTKFRETRH PVYRGVRRRG GRPGAAGRWV CEVRVPGARG  60
SRLWLGTFAT AEAAARAHDA AALALRGRAA CLNFADSAWR MPPVPASAAL AGARGVRDAV  120
AVAVEAFQRQ SAAPSSPAET FADDGDEEED NKDVLPVAAA EVFDAGAFEL DDGFRFGGMD  180
AGSYYASLAQ GLLVEPPAAG AWWEDGELAG SDMPLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1330941271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0133000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8859580.0JQ885958.1 Oryza sativa isolate UR14 DRE binding protein (DREB1B) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610928.21e-152dehydration-responsive element-binding protein 1B, partial
SwissprotQ8GUW41e-152DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B
TrEMBLI1QQK11e-151I1QQK1_ORYGL; Uncharacterized protein
STRINGORGLA09G0133000.11e-152(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.18e-13dehydration response element B1A