PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0163000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 168aa    MW: 18291.3 Da    PI: 4.7611
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0163000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB54.43.1e-1735130695
              NF-YB   6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                        ++lP a v r++k+ l + a       + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r
  ORGLA09G0163000.1  35 EELPKAIVRRLVKEKLAQVAAggaeviVNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFR 126
                        679**********99976543222333899************************************************************** PP

              NF-YB  92 eleg 95 
                        + ++
  ORGLA09G0163000.1 127 NKNA 130
                        9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-3230165IPR009072Histone-fold
PfamPF008083.4E-1136106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471139.84E-2737162IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAGETGEGGG SHSQPEKQPG QAAAAAASMA EAEVEELPKA IVRRLVKEKL AQVAAGGAEV  60
IVNKDAMSAF AESARIFIHY LSATANDMCK ESKRQTINAD DVLKALDEME FPEFVEPLNT  120
SLQEFRNKNA ARRSETTQKK AEKRRKIDKE SLPQEQNDAA DNGKTDED
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0163000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426340.0AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611896.11e-106DNA polymerase epsilon subunit 3
TrEMBLA0A0D3HA761e-118A0A0D3HA76_9ORYZ; Uncharacterized protein
TrEMBLI1QRF11e-118I1QRF1_ORYGL; Uncharacterized protein
STRINGORGLA09G0163000.11e-119(Oryza glaberrima)
STRINGOBART09G20070.11e-119(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-35nuclear factor Y, subunit B11