PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0001600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 243aa    MW: 26836.3 Da    PI: 8.057
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0001600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.5e-1889143256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ +++keq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  ORGLA10G0001600.1  89 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 143
                        788899***********************************************98 PP
2HD-ZIP_I/II125.81.9e-4089177190
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                        +kk+rlskeq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
  ORGLA10G0001600.1  89 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 177
                        69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1876146IPR009057Homeodomain-like
PROSITE profilePS5007117.00685145IPR001356Homeobox domain
SMARTSM003892.1E-1587149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1787148IPR009057Homeodomain-like
PfamPF000462.3E-1589143IPR001356Homeobox domain
CDDcd000865.81E-1589146No hitNo description
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PfamPF021831.5E-10145178IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.0E-21145188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAQDDEDVGL ALGLSLGSGG HRRQRESRDE AAASLLTLRL PAESGGQPQV VVKREVVRAE  60
EEEYEYEYER ALYSSSAAAA DDDEGCNSRK KLRLSKEQSA LLEDRFKEHS TLNPKQKVAL  120
AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CELLKRCCET LTEENRRLHR ELQQLRALTH  180
STAAGFFMAT TLPVPAATLS ICPSCERLAT AAAAGASPTA AADRTNKPTA PHLFSPFAKS  240
AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793SRKKLRL
2137145RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0001600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693241e-174AC069324.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0071K19, complete sequence.
GenBankAC0994001e-174AC099400.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0096E22, complete sequence.
GenBankAC1451271e-174AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
GenBankAP0149661e-174AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612921.11e-138homeobox-leucine zipper protein HOX15
SwissprotQ7G7371e-139HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLI1QS331e-176I1QS33_ORYGL; Uncharacterized protein
STRINGORGLA10G0001600.11e-177(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-59HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]