PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0024500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 157aa    MW: 16815.9 Da    PI: 12.6047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0024500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014131149523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        +C++s sr+s+L+rH  ++
  ORGLA10G0024500.1 131 ICHTSTSRRSSLRRHAERC 149
                        7**************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSRHLSFGTP SPTTTRRCPC RRRSRRRNST SPPPSSATPW DATTSTATAA RSAWCSSASA  60
TRRVRQPLPP STTPPPPAPG PLRPPPPPPS PTRMTGDFAC PHLASWWGGP RSTSGALGGF  120
SGTGSATRWS ICHTSTSRRS SLRRHAERCS CRRRTGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0024500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0877230.0AC087723.3 Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence.
GenBankAC1166000.0AC116600.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0036D19, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1QSR21e-97I1QSR2_ORYGL; Uncharacterized protein
STRINGORGLA10G0024500.12e-98(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5290222