PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0049300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 276aa    MW: 30720.4 Da    PI: 7.4135
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0049300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.21.1e-2063124259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                         Dg+ WrKYG K++k+s fpr YYrC+++   +C+++k v++++  dp +  +tY   H+++
  ORGLA10G0049300.1  63 TDGHLWRKYGEKKIKNSSFPRLYYRCSYRddrNCMATKVVQQENdADPPLYRVTYIHPHTCN 124
                        7***************************99999*******9865269************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.02E-2258125IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-2261124IPR003657WRKY domain
SMARTSM007741.6E-3362125IPR003657WRKY domain
PROSITE profilePS5081114.65363126IPR003657WRKY domain
PfamPF031061.3E-2364123IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MASRHQLHTM QFTDPASRSP RPVGGGVHGQ PPPTPMSSPF SSRKPRMQEG HPTCVNLTPI  60
PHTDGHLWRK YGEKKIKNSS FPRLYYRCSY RDDRNCMATK VVQQENDADP PLYRVTYIHP  120
HTCNPSPPAP TPAHVFTEPP PAKAEVHHAV LFRFSSTAGG HTANNAVHRQ QWQPAAATMA  180
AGAQAQLSMT MSDDEREQPP EAIRSAPPAR RLSMFRAVVD GLRQMRSSAP PTPSSSMVVD  240
DGWDTFSSFD LDTCEFSVDD ELLCGDHMYF PDSMQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-15641231068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0049300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997740.0AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613415.20.0probable WRKY transcription factor 32
TrEMBLI1QTG00.0I1QTG0_ORYGL; Uncharacterized protein
STRINGORGLA10G0049300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.19e-19ABA overly sensitive mutant 3