PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA10G0067800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 303aa MW: 32650.6 Da PI: 4.8565

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA10G0067800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.4e-19	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k ORGLA10G0067800.1 63 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 116 4557899**********************************************9 PP
2	HD-ZIP_I/II	125.8	2e-40	62	154	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv++LE+sFe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal+ e ++L++++++L++e++ ORGLA10G0067800.1 62 EKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIA 153 69**************************************************************************************9987 PP HD-ZIP_I/II 93 e 93 + ORGLA10G0067800.1 154 D 154 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-19	41	119	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.18E-18	55	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	58	118	IPR001356	Homeobox domain
SMART	SM00389	1.6E-18	61	122	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	63	116	IPR001356	Homeobox domain
CDD	cd00086	1.27E-16	63	119	No hit	No description
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
Pfam	PF02183	4.2E-13	118	158	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MKRPSCRGSS MAIIHDTSDQ QEDNMRSYMD GGGAAAYEEE EEEVEDDDGG GGGGGGGGGL 60 GEKKRRLAAE QVRALERSFE ADNKLDPERK ARIARDLRLH PRQVAVWFQN RRARWKTKQI 120 ERDFAALRSR HDALRLECDA LRRDKDALAA EIADLRDRVD GQMSVKLEAV AADEHQPPPP 180 PPPPPLAYNS KVVDGSTDSD SSAVFNEEAS PYSGAAIDHH HHQTPASYDT AGFTSFFAPS 240 TTLTSSLSFP SMFHASSHFD GHQELLVGGG GAGAVADADL GGAGFFAGDE HAGGLSWYGT 300 EGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA10G0067800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837674	0.0	CT837674.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120C09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613231.1	1e-173	homeobox-leucine zipper protein HOX8
Swissprot	Q338Z7	1e-174	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	I1QTZ5	0.0	I1QTZ5_ORYGL; Uncharacterized protein
STRING	ORGLA10G0067800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-33	homeobox protein 16

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]