PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0072900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 703aa    MW: 81252.7 Da    PI: 8.6865
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0072900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08684701926
                        GGGTS--TTTTT-SS-SS CS
            zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                        +++ G+C+yG++CkF+H+
  ORGLA10G0072900.1 684 YQQQGWCPYGENCKFMHD 701
                        8999*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.3E-5124167IPR003034SAP domain
SuperFamilySSF689063.11E-5125166No hitNo description
PROSITE profilePS5010314.352675703IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015677702IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6677702IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-6679701IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-6684701IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MAAPAAADDD HRAALPREED DGEEEEGSEE EVESDDEEEE EGEGYDWSEE DDPEAASLAG  60
ICDPDAGSDD DPTFDPAADG DLEVDAVLRS RMARMSLSSA RKDRKGSRMP KMGKEEMDLL  120
AMVDKLMHDG QLEKLKVYEC KAYLRMHKLR LSGNKEVLLT RIREQIEVKT MGEVKYPVSS  180
FALNCQGDSC KGDVVVFEQN IYKRKKGAPR GVKGHLCGQR TNAGRIIKES YGTKKQQHTF  240
TIEILWSRGY KPWPPLHPLL IKGRNLYKDK TMRQPWLDEE ERNRALQEKH ARGYVARKTR  300
EVRIKDKENE RMRRLNRNKE NKSKGQDNMN KKSSQAVFPQ HTVTTNTVQK RAEKIIPSLQ  360
HGESGNSSQQ HLSSKQTPTE QLLHYLPQFP HPQQHNEVLL QKGTSRTSTT QLINHQAPSL  420
QHAVKVETTQ QQQQQQPPKS IKPAPIQQSS AYPQQYPKHQ HHNQALPRVP PSQEQRAAVS  480
QTSAARQDFT NHQAPPSRQH GGSENMRRQE ISSRPTPTPT PQQAVSYTQQ QPPNHQYRNE  540
AFWQQGGTST SRTGFMDRQS NNWGSTDHDK PAFQPFTQKA KTYQHGSNCS GHHQALVDRE  600
TPHQPLRSRN QDYHWEDQSY HHQQNHHKNY YGHRQMSQDQ YHHQQNHHQN YHGRQGMNGN  660
QYHDRQNHNQ NPQRFRPWKP CFIYQQQGWC PYGENCKFMH DLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0072900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0799360.0AC079936.7 Oryza sativa Japonica Group chromosome X clone OSJNBb0061I18, complete sequence.
GenBankAC0917340.0AC091734.3 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876398.10.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLI1QU460.0I1QU46_ORYGL; Uncharacterized protein
STRINGORGLA10G0072900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]