PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0080300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 356aa    MW: 36921.2 Da    PI: 6.5094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0080300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-19108161356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ eq+++Le+ Fe+ +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  ORGLA10G0080300.1 108 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 161
                        456899***********************************************9 PP
2HD-ZIP_I/II127.74.8e-41107198192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrls eqv++LE+sFe+ +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkd++aL+r++da ++en++L + +++L++e+ 
  ORGLA10G0080300.1 107 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIV 198
                        69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1986164IPR009057Homeodomain-like
SuperFamilySSF466891.15E-1997165IPR009057Homeodomain-like
PROSITE profilePS5007117.313103163IPR001356Homeobox domain
SMARTSM003891.8E-19106167IPR001356Homeobox domain
CDDcd000863.42E-17108164No hitNo description
PfamPF000462.2E-16108161IPR001356Homeobox domain
PRINTSPR000315.2E-6134143IPR000047Helix-turn-helix motif
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PRINTSPR000315.2E-6143159IPR000047Helix-turn-helix motif
PfamPF021831.7E-9163202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MRPAMASNGA AAGAMAPFFP PNFLLQMQQP LPLHHQHLQD HAHGGHGGHH LLPPPPPSLS  60
PFLPDLAMDA PPPPMYEASG GDGGGGGAAS EDEEDGCGGG GGGGGGEKKR RLSVEQVRTL  120
ERSFESGNKL EPERKAQLAR ALGLQPRQVA IWFQNRRARW KTKQLEKDFD ALRRQLDAAR  180
AENDALLSLN SKLHAEIVAL KGGAAAAAGG GGSSCRQEAA SELINLNVKE TEASCSNRSE  240
NSSEINLDIS RPAPPPPPPV ANESPVNRGI PFYASIGRGG AGGVDIDQLL LRGGHSPSPA  300
AVTTPPPPKM ELGITGNGGG ADAAAAGAGS FGGLLCGAVD EQPPFWPWAD GHHHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155163RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0080300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877000.0AK287700.1 Oryza sativa Japonica Group cDNA, clone: J065130H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613423.11e-170homeobox-leucine zipper protein HOX23-like
SwissprotA2Z7341e-168HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL51e-168HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLI1QUC00.0I1QUC0_ORYGL; Uncharacterized protein
STRINGORGLA10G0080300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-45HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]