PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0110500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 256aa    MW: 29234 Da    PI: 7.0707
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0110500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like765e-24110166155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ...kYRl 55 
                        k rl Wt++LH++F+ av++L G++kA+Pk+il +mkvk Lt+e+v+SHLQ   kYR+
  ORGLA10G0110500.1 110 KSRLTWTTQLHRQFIAAVNHL-GEDKAVPKKILGIMKVKHLTREQVASHLQvhiKYRM 166
                        68*******************.*****************************7777886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.7E-8149No hitNo description
PROSITE profilePS5011012.963139IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.61E-6356IPR011006CheY-like superfamily
PROSITE profilePS5129412.264107166IPR017930Myb domain
SuperFamilySSF466892.78E-16108163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-24109170IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-22110160IPR006447Myb domain, plants
PfamPF002495.1E-6112161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASSGDTNTV MKYVANGASD FLLKPVRIEE LSNIWQHIFR KQMQDHKNNN MVGNLEKPGH  60
PPSILAMARA TPATTRSTAT EALLAPLENE VRDDMVNYNG EITDIRDLRK SRLTWTTQLH  120
RQFIAAVNHL GEDKAVPKKI LGIMKVKHLT REQVASHLQV HIKYRMQLKK SIPTTSKHGA  180
TLSSTALDKT QDHPSRSQYF NQDGCMEIMD YSLPRDDLSS GSECMLEEQN DYSSEGFQDF  240
RWDSDKQEYG PCFWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16109170462ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0110500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6092490.0KC609249.1 Oryza glaberrima early heading date 1 (Ehd1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876814.10.0two-component response regulator ORR30
SwissprotQ7Y0W30.0EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLI1QV720.0I1QV72_ORYGL; Uncharacterized protein
STRINGORGLA10G0110500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-28response regulator 2